Police were called to Promenade mall in the area of Bathurst and Centre Street a little after 8:30 p.m. for reports of a shooting.
Emergency crews found one victim inside the vehicle and the other victim in close proximity.
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The men were transported to hospital and the extent of their injuries are not yet known.
Police said the masked suspect had a handgun and was seen fleeing the area.
The area has been closed off for the investigation.